Copy Number Variation, Stabilizing Selection, and Parasitism in Chilodonella uncinata
| dc.contributor.advisor | Zufall, Rebecca A. | |
| dc.contributor.committeeMember | Azevedo, Ricardo B. R. | |
| dc.contributor.committeeMember | Cooper, Timothy F. | |
| dc.contributor.committeeMember | Graur, Dan | |
| dc.contributor.committeeMember | Morano, Lisa | |
| dc.creator | Spring, Kevin 1981- | |
| dc.date.accessioned | 2014-03-13T21:30:48Z | |
| dc.date.available | 2014-03-13T21:30:48Z | |
| dc.date.created | December 2012 | |
| dc.date.issued | 2012-12 | |
| dc.date.updated | 2014-03-13T21:30:54Z | |
| dc.description.abstract | Chilodonella uncinata is a unicellular eukaryotic species that has two nuclei within each cell: the micronucleus and macronucleus. The macronucleus is the center of cellular transcription but the genome is degraded during rounds of sexual conjugation. The macronuclear genome consists of many copies of single-gene chromosomes that were derived from the micronuclear genome. The primary purpose of this thesis is to elucidate the macronuclear chromosome distribution during asexual division of the ciliate C. uncinata. It is hypothesized that the macronuclear chromosomes are randomly assorted during asexual division, called the amitotic model. This type of division is predicted to lead to copy number variation (CNV) within asexually dividing populations and potentially leads to loss of macronuclear chromosomes. Using quantitative PCR (qPCR), differential amplification of macronuclear chromosomes were confirmed. Using a single-cell culturing method, along with qPCR, macronuclear chromosome copy number was found to be maintained after ~278 generations. Stabilizing selection was determined to be capable of maintaining chromosome copy number in a simulated population of C. uncinata in accordance with amitosis and without a molecular mechanism of copy number control. Finally, previous research suggested that C. uncinata is a parasite of mosquito larvae, but this dissertation shows that C. uncinata was not found in larvae tissue and did not increase mortality of mosquito larvae. | |
| dc.description.department | Biology and Biochemistry, Department of | |
| dc.format.digitalOrigin | born digital | |
| dc.format.mimetype | application/pdf | |
| dc.identifier.uri | http://hdl.handle.net/10657/556 | |
| dc.language.iso | eng | |
| dc.rights | The author of this work is the copyright owner. UH Libraries and the Texas Digital Library have their permission to store and provide access to this work. Further transmission, reproduction, or presentation of this work is prohibited except with permission of the author(s). | |
| dc.subject | Genomics | |
| dc.subject | Experimental evolution | |
| dc.subject | Simulations | |
| dc.subject | Stabilizing selection | |
| dc.subject | Parasitism | |
| dc.subject | Mosquitoes | |
| dc.subject | Ciliate | |
| dc.subject | Entomology | |
| dc.title | Copy Number Variation, Stabilizing Selection, and Parasitism in Chilodonella uncinata | |
| dc.type.dcmi | Text | |
| dc.type.genre | Thesis | |
| thesis.degree.college | College of Natural Sciences and Mathematics | |
| thesis.degree.department | Biology and Biochemistry, Department of | |
| thesis.degree.discipline | Biology | |
| thesis.degree.grantor | University of Houston | |
| thesis.degree.level | Doctoral | |
| thesis.degree.major | Ecology and Evolution | |
| thesis.degree.name | Doctor of Philosophy |