Experimental and Computational Modeling of the Dynamic Formation of the Proinflammatory Microenvironment in Response to Francisella tularensis LVS Infection

dc.contributor.advisorMay, Elebeoba E.
dc.contributor.committeeMemberAl-Ubaidi, Muayyad
dc.contributor.committeeMemberGifford, Howard C.
dc.contributor.committeeMemberOmurtag, Ahmet
dc.contributor.committeeMemberCarson, Bryan D.
dc.creatorSalim, Taha
dc.creator.orcid0000-0001-5239-6463
dc.date.accessioned2019-09-14T19:58:48Z
dc.date.available2019-09-14T19:58:48Z
dc.date.createdMay 2017
dc.date.issued2017-05
dc.date.submittedMay 2017
dc.date.updated2019-09-14T19:58:49Z
dc.description.abstractThe proinflammatory microenvironment (PME) plays a critical role in determining the outcome of infection. Intracellular pathogens can elicit immune responses within host immune cells that cause the release of cytokines, chemokines, and effector molecules within the surrounding microenvironment. Neighboring immune cells recruited into the PME can be primed and activated by cytokine exposure acquiring the ability to more robustly eliminate any subsequent infection. Early responders such as macrophages and natural killer (NK) cells are critical in the formation of an effective proinflammatory microenvironment. However, some pathogens have adopted immune evasion mechanisms, thus, attenuating the formation of an effective PME. Accordingly, in silico computational models can capture the biological complexity of host-pathogen interactions within a series of mathematical equations. These models possess the ability to predict the time-course dynamics of infection, can be utilized to test biological hypotheses in silico, and are cost-efficient when compared to experimental techniques. In the research presented here, we developed a systems biology based computational and experimental model to investigate the dynamics of infection for the gram-negative bacterium and potential biowarfare agent, Francisella tularensis subsp. holarctica (Live Vaccine Strain (LVS)). Two key cytokines have been elucidated as key players in the PME against F. tularensis LVS infection, namely, TNF-α and IFN-γ. We therefore engineered an input driven, in silico model that is able to capture the dynamics of intracellular responses and gene expression profiles in response to pathogenic and cytokine stimulation found in the extracellular compartment. Our model captures keyregulatory mechanisms of the proinflammatory response under gram-negative bacteria and specifically, F. tularensis LVS infection. In addition, we utilized the model to investigate the effects of the changing PME on the intracellular bacterial load under IFN-γ and/or TNF-α priming. To validate our model, we first developed an in vitro macrophage experimental platform to test the effects of F. tularensis LVS infection on host macrophages. However, in order to quantify the endogenous production of IFN-γ, we expanded the model into an ex vivo platform with bone-marrow derived macrophages and splenic NK cells to better understand the mechanisms underlying the in vivo outcome of infection. The in silico model we developed has the potential to highlight key immunomodulatory sites for targeted drug therapy. Further, by successfully optimizing our model to F. tularensis specific data and simulating similar outcomes to our ex vivo platform, our model also provides a basis to test other bacterial infection systems.
dc.description.departmentBiomedical Engineering, Department of
dc.format.digitalOriginborn digital
dc.format.mimetypeapplication/pdf
dc.identifier.citationPortions of this document appear in: Salim, Taha, Cheryl L. Sershen, and Elebeoba E. May. "Investigating the role of TNF-α and IFN-γ activation on the dynamics of iNOS gene expression in LPS stimulated macrophages." PloS one 11, no. 6 (2016): e0153289.
dc.identifier.urihttps://hdl.handle.net/10657/4622
dc.language.isoeng
dc.rightsThe author of this work is the copyright owner. UH Libraries and the Texas Digital Library have their permission to store and provide access to this work. UH Libraries has secured permission to reproduce any and all previously published materials contained in the work. Further transmission, reproduction, or presentation of this work is prohibited except with permission of the author(s).
dc.subjectInterferon-gamma
dc.subjectFrancisella tularensis
dc.titleExperimental and Computational Modeling of the Dynamic Formation of the Proinflammatory Microenvironment in Response to Francisella tularensis LVS Infection
dc.type.dcmiText
dc.type.genreThesis
thesis.degree.collegeCullen College of Engineering
thesis.degree.departmentBiomedical Engineering, Department of
thesis.degree.disciplineBiomedical Engineering
thesis.degree.grantorUniversity of Houston
thesis.degree.levelDoctoral
thesis.degree.nameDoctor of Philosophy

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